1PRZ

Crystal structure of pseudouridine synthase RluD catalytic module

Structural Biology Knowledgebase: 1PRZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.218

Literature

Macromolecules
Sequence Display for 1PRZ

Classification: LYASE

Total Structure Weight: 29229.34

Macromolecule Entities
Molecule Chains Length Organism Details
Ribosomal large subunit pseudouridine synthase D A 252 Escherichia coli EC#: 5.4.99.23 IUBMB
Fragment: catalytic domain
Mutation: M146M, M179M, M199M, M204M, M215M, M240M, M283M, M295M, M305M, M312M
Gene Name(s): rluD sfhB yfiI b2594 JW2576
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.218
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 52.26 α = 90.00
b = 76.36 β = 90.00
c = 85.72 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-20
  • Released Date: 2003-11-04
  • Deposition author(s): Sivaraman, J., Iannuzzi, P., Cygler, M., Matte, A., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4