1PN4

Crystal structure of 2-enoyl-CoA hydratase 2 domain of Candida tropicalis multifunctional enzyme type 2 complexed with (3R)-hydroxydecanoyl-CoA.

Structural Biology Knowledgebase: 1PN4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.171

Literature

Macromolecules
Sequence Display for 1PN4

Classification: LYASE

Total Structure Weight: 128649.66

Macromolecule Entities
Molecule Chains Length Organism Details
Peroxisomal hydratase-dehydrogenase-epimerase A, B, C, D 280 Candida tropicalis EC#: 4.2.1 IUBMB
Fragment: 2-enoyl-CoA hydratase 2 domain
Mutation: E1M, H187Q
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HDC
Query on HDC

A, B, D 3R-HYDROXYDECANOYL-COENZYME A
3R-HYDROXYDECANOYL-COA (Synonym)
C31 H54 N7 O18 P3 S
HIVSMYZAMUNFKZ-PDQACDDGSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.171
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 48.64 α = 90.00
b = 151.29 β = 90.50
c = 81.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-12
  • Released Date: 2004-04-13
  • Deposition author(s): Koski, M.K., Haapalainen, A.M., Hiltunen, J.K., Glumoff, T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4