1PMU

The crystal structure of JNK3 in complex with a phenantroline inhibitor

Structural Biology Knowledgebase: 1PMU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.218

Literature

Macromolecules
Sequence Display for 1PMU

Classification: TRANSFERASE

Total Structure Weight: 42309.77

Macromolecule Entities
Molecule Chains Length Organism Details
Mitogen-activated protein kinase 10 A 364 Homo sapiens EC#: 2.7.11.24 IUBMB
Gene Name(s): MAPK10 Gene View JNK3 JNK3A PRKM10 SAPK1B
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
9HP
Query on 9HP

A 9-(4-HYDROXYPHENYL)-2,7-PHENANTHROLINE
C18 H12 N2 O
IUSSGTWHFMSCOY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
9HP IC50: 590 nM (100) BindingDB

N/A in BindingMoad
IC50: 590 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.218
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 62.40 α = 90.00
b = 62.38 β = 90.00
c = 98.12 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-11
  • Released Date: 2003-09-09
  • Deposition author(s): Scapin, G., Patel, S.B., Lisnock, J., Becker, J.W., LoGrasso, P.V.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4