1PMN

Crystal structure of JNK3 in complex with an imidazole-pyrimidine inhibitor

Structural Biology Knowledgebase: 1PMN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.228

Literature

Macromolecules
Sequence Display for 1PMN

Classification: transferase

Total Structure Weight: 42487.47

Macromolecule Entities
Molecule Chains Length Organism Details
Mitogen-activated protein kinase 10 A 364 Homo sapiens EC#: 2.7.11.24 IUBMB
Gene Name(s): MAPK10 Gene View JNK3 JNK3A PRKM10 SAPK1B
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
984
Query on 984

A CYCLOPROPYL-{4-[5-(3,4-DICHLOROPHENYL)-2- [(1-METHYL)-PIPERIDIN]-4-YL-3-PROPYL-3H-IMIDAZOL- 4-YL]-PYRIMIDIN-2-YL}AMINE
C25 H30 Cl2 N6
XCTKFTOEAKJMII-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
984 IC50: 1.6 - 7.1 nM (100) BindingDB

IC50: 7.1 nM  BindingMOAD
IC50: 7.1 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.228
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.08 α = 90.00
b = 71.34 β = 90.00
c = 107.17 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-11
  • Released Date: 2003-09-09
  • Deposition author(s): Scapin, G., Patel, S.B., Lisnock, J., Becker, J.W., LoGrasso, P.V.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4