1PJO

Crystal Structure of an RNA/DNA hybrid of HIV-1 PPT

Structural Biology Knowledgebase: 1PJO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.156
  • R-Value Work: 0.117

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1PJO

Classification: DNA-RNA HYBRID

Total Structure Weight: 6392.92

Macromolecule Entities
Molecule Chains Length Organism Details
5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' A 10 synthetic
5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3' B 10 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.156
  • R-Value Work: 0.117
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 25.59 α = 90.00
b = 40.76 β = 90.00
c = 45.74 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2003-06-03
  • Released Date: 2003-12-09
  • Deposition author(s): Kopka, M.L., Lavelle, L., Han, G.W., Ng, H.-L., Dickerson, R.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4