1PJ7

Structure of dimethylglycine oxidase of Arthrobacter globiformis in complex with folinic acid

Structural Biology Knowledgebase: 1PJ7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.159

Literature

Macromolecules
Sequence Display for 1PJ7

Classification: OXIDOREDUCTASE

Total Structure Weight: 91356.16

Macromolecule Entities
Molecule Chains Length Organism Details
N,N-dimethylglycine oxidase A 830 Arthrobacter globiformis EC#: 1.5.3.10 IUBMB
Gene Name(s): dmg
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FFO
Query on FFO

A N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8- hexahydropteridin-6-yl]methyl}amino)benzoyl]- L-glutamic acid
[6S]-5-FORMYL-TETRAHYDROFOLATE; 6S-FOLINIC ACID (Synonym)
C20 H23 N7 O7
VVIAGPKUTFNRDU-STQMWFEESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.159
  • Space Group: C 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 70.62 α = 90.00
b = 223.74 β = 90.00
c = 119.37 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-01
  • Released Date: 2003-10-07
  • Deposition author(s): Leys, D., Basran, J., Scrutton, N.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4