1PJ5

Crystal structure of dimethylglycine oxidase of Arthrobacter globiformis in complex with acetate

Structural Biology Knowledgebase: 1PJ5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.61 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.160

Literature

Macromolecules
Sequence Display for 1PJ5

Classification: OXIDOREDUCTASE

Total Structure Weight: 90943.77

Macromolecule Entities
Molecule Chains Length Organism Details
N,N-dimethylglycine oxidase A 830 Arthrobacter globiformis EC#: 1.5.3.10 IUBMB
Gene Name(s): dmg
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.61 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.160
  • Space Group: C 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 71.38 α = 90.00
b = 226.68 β = 90.00
c = 120.66 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-01
  • Released Date: 2003-10-07
  • Deposition author(s): Leys, D., Basran, J., Scrutton, N.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4