1PEX

COLLAGENASE-3 (MMP-13) C-TERMINAL HEMOPEXIN-LIKE DOMAIN

Structural Biology Knowledgebase: 1PEX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Observed: 0.195

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1PEX

Classification: METALLOPROTEASE

Total Structure Weight: 24430.72

Macromolecule Entities
Molecule Chains Length Organism Details
COLLAGENASE-3 A 207 Homo sapiens EC#: 3.4.24 IUBMB
Fragment: C-TERMINAL HEMOPEXIN-LIKE DOMAIN
Gene Name(s): MMP13 Gene View

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Observed: 0.195
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 52.94 α = 90.00
b = 52.94 β = 90.00
c = 144.02 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-05-24
  • Released Date: 1996-12-23
  • Deposition author(s): Gomis-Ruth, F.X., Gohlke, U., Betz, M., Knauper, V., Murphy, G., Lopez-Otin, C., Bode, W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4