1PD2

CRYSTAL STRUCTURE OF HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE COMPLEX WITH GLUTATHIONE

Structural Biology Knowledgebase: 1PD2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.204

Literature

Macromolecules
Sequence Display for 1PD2

Classification: LIGASE

Total Structure Weight: 47262.91

Macromolecule Entities
Molecule Chains Length Organism Details
HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE 1, 2 199 Rattus norvegicus EC#: 5.3.99.2 IUBMB
Gene Name(s): Hpgds Gsts Pgds Ptgds2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GSH
Query on GSH

1, 2 GLUTATHIONE
C10 H17 N3 O6 S
RWSXRVCMGQZWBV-WDSKDSINSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.204
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 56.50 α = 90.00
b = 56.50 β = 90.00
c = 233.40 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-12-14
  • Released Date: 1999-10-13
  • Deposition author(s): Miyano, M., Ago, H.

Revision History

  • 2011-12-14
    Type: Non-polymer description | Details: change GTT to GSH
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4