1PCW

Aquifex aeolicus KDO8PS in complex with cadmium and APP, a bisubstrate inhibitor

Structural Biology Knowledgebase: 1PCW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 1PCW

Classification: LYASE

Total Structure Weight: 60484.46

Macromolecule Entities
Molecule Chains Length Organism Details
2-dehydro-3-deoxyphosphooctonate aldolase A, B 267 Aquifex aeolicus EC#: 2.5.1.55 IUBMB
Gene Name(s): kdsA aq_085
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
H4P
Query on H4P

A, B 1-DEOXY-6-O-PHOSPHONO-1-[(PHOSPHONOMETHYL)AMINO]- L-THREO-HEXITOL
C7 H19 N O11 P2
YAEYOLVKVWEHNB-DBRKOABJSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CD
Query on CD

A, B CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.196
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 84.48 α = 90.00
b = 84.48 β = 90.00
c = 159.07 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-05-17
  • Released Date: 2004-02-17
  • Deposition author(s): Xu, X., Wang, J., Grison, C., Petek, S., Coutrot, P., Birck, M., Woodard, R.W., Gatti, D.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values