1PBR

STRUCTURE OF 16S RIBOSOMAL RNA, NMR, MINIMIZED AVERAGE STRUCTURE

Structural Biology Knowledgebase: 1PBR SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: --
  • Conformers Submitted: 1
  • Selection Criteria:

Literature

Macromolecules
Sequence Display for 1PBR

Classification: RNA

Total Structure Weight: 9307.90

Macromolecule Entities
Molecule Chains Length Organism Details
16S RIBOSOMAL RNA A 27 synthetic NTS 1404/1412-1488/1497

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PA1
Query on PA1

A 2-amino-2-deoxy-alpha-D-glucopyranose
C6 H13 N O5
MSWZFWKMSRAUBD-UKFBFLRUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IDG
Query on IDG

A O-2,6-DIAMINO-2,6-DIDEOXY-BETA-L-IDOPYRANOSE
C6 H14 N2 O4
SQTHUUHOUPJYLK-BSQWINAVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CYY
Query on CYY

A 2-DEOXYSTREPTAMINE
C6 H14 N2 O3
DTFAJAKTSMLKAT-JDCCYXBGSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BDR
Query on BDR

A BETA-D-RIBOFURANOSYL
C5 H10 O5
HMFHBZSHGGEWLO-TXICZTDVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: --
  • Conformers Submitted: 1
  • Selection Criteria: --

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1996-09-12
  • Released Date: 1997-09-17
  • Deposition author(s): Fourmy, D., Recht, M.I., Blanchard, S., Puglisi, J.D.

Revision History

  • 2013-01-16
    Type: Non-polymer description | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4