1P90

The Three-dimensional Structure of the Core Domain of NafY from Azotobacter vinelandii determined at 1.8 resolution

Structural Biology Knowledgebase: 1P90 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 1P90

Classification: PROTEIN BINDING

Total Structure Weight: 15576.76

Macromolecule Entities
Molecule Chains Length Organism Details
hypothetical protein A 145 Azotobacter vinelandii Fragment: core domain
Gene Name(s): nafY
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.188
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 49.20 α = 90.00
b = 49.20 β = 90.00
c = 99.20 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-05-08
  • Released Date: 2003-08-19
  • Deposition author(s): Dyer, D.H., Rubio, L.M., Thoden, J.B., Holden, H.M., Ludden, P.W., Rayment, I.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4