1P5W

The structures of host range controlling regions of the capsids of canine and feline parvoviruses and mutants

Structural Biology Knowledgebase: 1P5W SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.200

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1P5W

Classification: Virus / DNA [ VIPERdb ]

Total Structure Weight: 64854.50


Macromolecule Entities
Molecule Chains Length Organism Details
Coat protein VP2 A 548 Carnivore protoparvovirus 1 Fragment: sequence database residues 190-737
Mutation: N93R
Gene Name(s):
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(P*(3DR)P*TP*AP*CP*CP*TP*CP*TP*TP*GP*C)-3' B 11 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
3DR
Query on 3DR
B DNA LINKING C5 H11 O6 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.200
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 372.42 α = 90.00
b = 373.02 β = 90.00
c = 377.08 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-04-28
  • Released Date: 2003-08-26
  • Deposition author(s): Agbandje-McKenna, M., Govindasamy, L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4