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The structures of host range controlling regions of the capsids of canine and feline parvoviruses and mutants
DOI:10.2210/pdb1p5w/pdb   NDB ID: PD0432
1P5W
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Virus/dna  [ VIPERdb   ]
    Structure Weight: 64854.50
    Molecule: 5'-D(P*(3DR)P*TP*AP*CP*CP*TP*CP*TP*TP*GP*C)-3'
    Polymer: 1 Type: dna Length: 11
    Chains: B
    Molecule: Coat protein VP2
    Polymer: 2 Type: protein Length: 548
    Chains: A
    Fragment: sequence database residues 190-737
    Mutation: N93R
    Organism: Canine parvovirus
    UniProtKB: Protein Feature View | Search PDB | P17455  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Canine parvovirus   Taxonomy   Expression System: Felis catus  
     
  •   Related PDB Entries Hide
    Identifier Details
    1P5Y   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MG
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    MG Mg
    MAGNESIUM ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    3DR
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    3DR C5 H11 O6 P dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD0432
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
No info available for origin of biological assembly
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  •   Deposition Summary Hide
    Authors:   Agbandje-McKenna, M.,  Govindasamy, L.

    Deposition:   2003-04-28
    Release:   2003-08-26
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   3.30
    R-Value: 0.200 (obs.)
    R-Free: 0.202
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 372.42 α = 90.00 
    b = 373.02 β = 90.00 
    c = 377.08 γ = 90.00