1P52

Structure of Arginine kinase E314D mutant

Structural Biology Knowledgebase: 1P52 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.178

Literature

Macromolecules
Sequence Display for 1P52

Classification: TRANSFERASE

Total Structure Weight: 41044.86

Macromolecule Entities
Molecule Chains Length Organism Details
Arginine kinase A 357 Limulus polyphemus EC#: 2.7.3.3 IUBMB
Mutation: E103Q, G116A, E314D
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DAR
Query on DAR

A D-ARGININE
C6 H15 N4 O2
ODKSFYDXXFIFQN-SCSAIBSYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NO3
Query on NO3

A NITRATE ION
N O3
NHNBFGGVMKEFGY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.178
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 65.39 α = 90.00
b = 70.31 β = 90.00
c = 80.14 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-04-24
  • Released Date: 2003-06-17
  • Deposition author(s): Pruett, P.S., Azzi, A., Clark, S.A., Yousef, M.S., Gattis, J.L., Somasundarum, T., Ellington, W.R., Chapman, M.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4