1P4D

F factor TraI Relaxase Domain

Structural Biology Knowledgebase: 1P4D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.233

Literature

Macromolecules
Sequence Display for 1P4D

Classification: HYDROLASE

Total Structure Weight: 109784.20

Macromolecule Entities
Molecule Chains Length Organism Details
TraI protein A, B, C 330 Escherichia coli EC#: 3.6.1 IUBMB
Fragment: 36 kDa N-terminal domain of TraI (Residues 1-330)
Gene Name(s): traI ECOK12F104
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A, B, C 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.233
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 128.22 α = 90.00
b = 128.22 β = 90.00
c = 121.18 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-04-22
  • Released Date: 2003-10-14
  • Deposition author(s): Datta, S., Larkin, C., Schildbach, J.F.

Revision History

  • 2011-11-16
    Type: Atom occupancy | Details: Atom occupancy
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4