INTRAMOLECULAR DNA TRIPLEX WITH 1-PROPYNYL DEOXYURIDINE IN THE THIRD STRAND, NMR, 10 STRUCTURES
DOI:10.2210/pdb1p3x/pdb   NDB ID: 1P3X
1P3X
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA
    Structure Weight: 5202.54
    Molecule: DNA (5'-D(*AP*GP*AP*GP*AP*GP*AP*A)-3')
    Polymer: 1 Type: dna Length: 8
    Chains: A
    Details: HEXAKIS (ETHYLENE GLYCOL) LINKERS BETWEEN A 8 AND T 9 AND BETWEEN T 16 AND T 17. C 18, C 20, AND C 22 ARE PROTONATED
    Molecule: DNA (5'-D(*TP*TP*CP*TP*CP*TP*CP*T)-3')
    Polymer: 2 Type: dna Length: 8
    Chains: B
    Details: HEXAKIS (ETHYLENE GLYCOL) LINKERS BETWEEN A 8 AND T 9 AND BETWEEN T 16 AND T 17. C 18, C 20, AND C 22 ARE PROTONATED
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    DC
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    DC C9 H14 N3 O7 P
    2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
    DC:1P3X
    DCM
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    DCM C9 H14 N3 O7 P
    2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
    DCM:1P3X
    PDU
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    PDU C12 H19 N2 O8 P
    5(1-PROPYNYL)-2'-DEOXYURIDINE-5-MONOPHOSPHATE
    PDU:1P3X
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:1P3X
     
 
Data in orange boxes are gathered from external resources (when available).
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  •   Deposition Summary Hide
    Authors:   Phipps, A.K.,  Tarkoy, M.,  Schultze, P.,  Feigon, J.

    Deposition:   1998-02-05
    Release:   1998-05-06
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
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  •   Experimental Details Hide
    Method:   SOLUTION NMR
    Exp. Data:
    N/A
    NMR Ensemble
    Conformers Calculated:     30
    Conformers Submitted:     10
    Selection Criteria: LOWEST OVERALL ENERGY
    NMR Refine
    Method: SOLUTION NMR