1P3Q

Mechanism of Ubiquitin Recognition by the CUE Domain of VPS9

Structural Biology Knowledgebase: 1P3Q SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.260

Literature

Macromolecules
Sequence Display for 1P3Q

Classification: TRANSLATION

Total Structure Weight: 29223.05

Macromolecule Entities
Molecule Chains Length Organism Details
Vacuolar protein sorting-associated protein VPS9 Q, R 54 Saccharomyces cerevisiae Fragment: CUE DOMAIN
Mutation: K435A, K436A
Gene Name(s): VPS9 VPT9 YML097C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ubiquitin U, V 76 Bos taurus Gene Name(s): UBC Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
Q, R L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.260
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 101.61 α = 90.00
b = 45.89 β = 96.53
c = 57.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-04-18
  • Released Date: 2003-06-24
  • Deposition author(s): Prag, G., Misra, S., Jones, E.A., Ghirlando, R., Davies, B.A., Horazdovsky, B.F., Hurley, J.H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4