1P1Y

Crystal structure of a continuous three-dimensional DNA lattice from d(GGACAGATGGGAG)

Structural Biology Knowledgebase: 1P1Y SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.203

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1P1Y

Classification: DNA

Total Structure Weight: 4273.79

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*GP*GP*AP*(CBR)P*AP*GP*AP*(BRU)P*GP*GP*GP*AP*G)-3' X 13 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

X MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
CBR
Query on CBR
X DNA LINKING C9 H13 Br N3 O7 P DC
BRU
Query on BRU
X DNA LINKING C9 H12 Br N2 O8 P DU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.203
  • Space Group: P 64
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 40.63 α = 90.00
b = 40.63 β = 90.00
c = 55.27 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2003-04-14
  • Released Date: 2004-06-01
  • Deposition author(s): Paukstelis, P.J., Nowakowski, J., Birktoft, J.J., Seeman, N.C.

Revision History

  • 2011-11-02
    Type: Non-polymer description | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4