1P10

STRUCTURAL PLASTICITY AS A DETERMINANT OF ENZYME SPECIFICITY. CREATING BROADLY SPECIFIC PROTEASES

Structural Biology Knowledgebase: 1P10 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Observed: 0.144

Literature

Macromolecules
Sequence Display for 1P10

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 20381.53

Macromolecule Entities
Molecule Chains Length Organism Details
ALPHA-LYTIC PROTEASE A 198 Lysobacter enzymogenes EC#: 3.4.21.12 IUBMB
Mutation: M213A
Gene Name(s): alpha-LP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
METHOXYSUCCINYL-ALA-ALA-PRO-VALINE BORONIC ACID INHIBITOR P 5 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000316
Query on PRD_000316
P METHOXYSUCCINYL-ALA-ALA-PRO-VALINE BORONIC ACID Peptide-like /
Inhibitor
Ligand Explorer

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Observed: 0.144
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 66.30 α = 90.00
b = 66.30 β = 90.00
c = 80.30 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1989-04-24
  • Released Date: 1990-04-15
  • Deposition author(s): Bone, R., Agard, D.A.

Revision History

  • 2012-12-12
    Type: Other | Details: Add PRD info
  • 2011-07-13
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-13
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-13
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-13
    Type: Function and keywords | Details: Function and keywords
  • 2011-07-13
    Type: Linkage | Details: Linkage
  • 2011-07-13
    Type: Sequence database correspondence | Details: Sequence database correspondence