1OZV

Crystal structure of the SET domain of LSMT bound to Lysine and AdoHcy

Structural Biology Knowledgebase: 1OZV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.227

Literature

Macromolecules
Sequence Display for 1OZV

Classification: TRANSFERASE

Total Structure Weight: 153189.70

Macromolecule Entities
Molecule Chains Length Organism Details
Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast A, B, C 444 Pisum sativum EC#: 2.1.1.127 IUBMB
Gene Name(s): RBCMT
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SAH
Query on SAH

A, B, C S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
LYS
Query on LYS

A LYSINE
C6 H15 N2 O2
KDXKERNSBIXSRK-YFKPBYRVSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
LYS N/A in BindingDB
N/A in BindingMoad
Ki: 36600000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.227
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 131.96 α = 90.00
b = 156.90 β = 90.00
c = 267.55 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-04-09
  • Released Date: 2003-07-01
  • Deposition author(s): Trievel, R.C., Flynn, E.M., Houtz, R.L., Hurley, J.H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values