1OW3

Crystal Structure of RhoA.GDP.MgF3-in Complex with RhoGAP

Structural Biology Knowledgebase: 1OW3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 1OW3

Classification: GENE REGULATION / SIGNALING PROTEIN

Total Structure Weight: 49759.75

Macromolecule Entities
Molecule Chains Length Organism Details
Rho-GTPase-activating protein 1 A 242 Homo sapiens Gene Name(s): ARHGAP1 Gene View CDC42GAP RHOGAP1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Transforming protein RhoA B 193 Homo sapiens Mutation: F25N
Gene Name(s): RHOA Gene View ARH12 ARHA RHO12
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDP
Query on GDP

B GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MGF
Query on MGF

B TRIFLUOROMAGNESATE
F3 Mg
GJOMWUHGUQLOAC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.186
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.49 α = 90.00
b = 71.40 β = 90.00
c = 91.15 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-03-28
  • Released Date: 2003-05-06
  • Deposition author(s): Graham, D.L., Lowe, P.N., Grime, G.W., Marsh, M., Rittinger, K., Smerdon, S.J., Gamblin, S.J., Eccleston, J.F.

Revision History

  • 2014-04-16
    Type: Data collection | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4