1OVP

LecB (PA-LII) in complex with fructose

Structural Biology Knowledgebase: 1OVP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.182

Literature

Macromolecules
Sequence Display for 1OVP

Classification: SUGAR BINDING PROTEIN

Total Structure Weight: 11995.14

Macromolecule Entities
Molecule Chains Length Organism Details
hypothetical protein LecB A 114 Pseudomonas aeruginosa Gene Name(s): lecB PA3361
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BDF
Query on BDF

A BETA-D-FRUCTOPYRANOSE
C6 H12 O6
LKDRXBCSQODPBY-ARQDHWQXSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.182
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.06 α = 90.00
b = 69.05 β = 90.00
c = 74.09 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-03-27
  • Released Date: 2003-09-09
  • Deposition author(s): Loris, R., Tielker, D., Jaeger, K.-E., Wyns, L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4