1OGS

human acid-beta-glucosidase

Structural Biology Knowledgebase: 1OGS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.195

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1OGS

Classification: HYDROLASE

Total Structure Weight: 113368.28

Macromolecule Entities
Molecule Chains Length Organism Details
GLUCOSYLCERAMIDASE A, B 497 Homo sapiens EC#: 3.2.1.45 IUBMB
Gene Name(s): GBA Gene View GC Gene View GLUC

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
JSmol
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.195
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 107.74 α = 90.00
b = 285.23 β = 90.00
c = 91.68 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-05-13
  • Released Date: 2003-07-03
  • Deposition author(s): Dvir, H., Harel, M., Mccarthy, A.A., Toker, L., Silman, I., Futerman, A.H., Sussman, J.L.

Revision History

  • 2012-01-25
    Type: Other | Details: REMARK 375,REMARK 525
  • 2012-01-25
    Type: Atom nomenclature | Details: HETATM
  • 2012-01-25
    Type: Advisory | Details: CAVEAT
  • 2012-01-25
    Type: Geometry validation | Details: REMARK 500
  • 2012-01-25
    Type: Version format compliance | Details: REMARK 4
  • 2012-01-25
    Type: Refinement description | Details: REMARK 3
  • 2012-01-25
    Type: Binding sites and description | Details: REMARK 800,SITE
  • 2012-01-25
    Type: Non-polymer description | Details: HETSYN,FORMUL,HETNAM,HET
  • 2012-01-25
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2012-01-25
    Type: Linkage | Details: LINK