1OEE

YODA FROM ESCHERICHIA COLI CRYSTALLISED WITH CADMIUM IONS

Structural Biology Knowledgebase: 1OEE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.169

Literature

Macromolecules
Sequence Display for 1OEE

Classification: STRESS PROTEIN / LIPOCALIN

Total Structure Weight: 22823.70

Macromolecule Entities
Molecule Chains Length Organism Details
HYPOTHETICAL PROTEIN YODA A 193 Escherichia coli Gene Name(s): zinT yodA b1973 JW1956
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CD
Query on CD

A CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.169
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 106.47 α = 90.00
b = 47.99 β = 92.77
c = 42.49 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-03-27
  • Released Date: 2003-08-15
  • Deposition author(s): David, G., Blondeau, K., Renouard, M., Penel, S., Lewit-Bentley, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4