1OE5

Xenopus SMUG1, an anti-mutator uracil-DNA Glycosylase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.163

Literature

Macromolecules
Sequence Display for 1OE5

Classification: HYDROLASE / DNA

Total Structure Weight: 63920.51


Macromolecule Entities
Molecule Chains Length Organism Details
SINGLE-STRAND SELECTIVE MONOFUNCTIONAL URACIL DNA GLYCOSYLASE A, B 247 Xenopus laevis EC#: 3.2.2 IUBMB
Fragment: RESIDUES 1-247
Gene Name(s): smug1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*CP*CP*GP*TP*GP*AP*GP*TP*CP*CP*G)-3' E 12 synthetic
5'-D(*CP*3DRP*GP*GP*AP*CP*TP*3DRP*AP*CP*GP*GP*GP)-3' F 13 synthetic

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EPE
Query on EPE

A, B 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DUR
Query on DUR

F 2'-DEOXYURIDINE
C9 H12 N2 O5
MXHRCPNRJAMMIM-SHYZEUOFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
URA
Query on URA

A URACIL
C4 H4 N2 O2
ISAKRJDGNUQOIC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IPA
Query on IPA

A, B ISOPROPYL ALCOHOL
2-PROPANOL (Synonym)
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
3DR
Query on 3DR
F DNA LINKING C5 H11 O6 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.163
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 120.60 α = 90.00
b = 85.65 β = 118.56
c = 78.47 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-03-19
  • Released Date: 2003-07-11
  • Deposition author(s): Wibley, J.E.A., Pearl, L.H.

Revision History

  • 2013-07-17
    Type: Sequence database correspondence | Details: DBREF
  • 2013-07-17
    Type: Geometry validation | Details: REMARK 500
  • 2013-07-17
    Type: Atom nomenclature | Details: ATOM,HETATM
  • 2013-07-17
    Type: Non-polymer description | Details: HETSYN,FORMUL
  • 2013-07-17
    Type: Function and keywords | Details: KEYWDS
  • 2013-07-17
    Type: Citation | Details: JRNL
  • 2013-07-17
    Type: Polymer description | Details: COMPND,SEQRES
  • 2013-07-17
    Type: Binding sites and description | Details: REMARK 800,SITE
  • 2013-07-17
    Type: Other | Details: SCALE1,TER,REMARK 470,HEADER,REMARK 900,REMARK 999,REMARK 525,MASTER,REMARK 280
  • 2013-07-17
    Type: Version format compliance | Details: REMARK 4
  • 2013-07-17
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2013-07-17
    Type: Linkage | Details: CONECT,LINK