1ODM

ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (ANAEROBIC AC-VINYLGLYCINE FE COMPLEX)

Structural Biology Knowledgebase: 1ODM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.15 Å
  • R-Value Free: 0.152
  • R-Value Work: 0.143

Literature

Macromolecules
Sequence Display for 1ODM

Classification: OXIDOREDUCTASE

Total Structure Weight: 38255.63

Macromolecule Entities
Molecule Chains Length Organism Details
ISOPENICILLIN N SYNTHASE A 331 Aspergillus nidulans EC#: 1.21.3.1 IUBMB
Gene Name(s): ipnA ips AN2622
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ASV
Query on ASV

A DELTA-(L-ALPHA-AMINOADIPOYL)-L-CYSTEINYL- D-VINYLGLYCINE
C13 H21 N3 O6 S
JJJCGQKXGIRXKN-YIZRAAEISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE2
Query on FE2

A FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.15 Å
  • R-Value Free: 0.152
  • R-Value Work: 0.143
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 46.70 α = 90.00
b = 71.39 β = 90.00
c = 100.91 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-19
  • Released Date: 2003-06-19
  • Deposition author(s): Elkins, J.M., Rutledge, P.J., Burzlaff, N.I., Clifton, I.J., Adlington, R.M., Roach, P.L., Baldwin, J.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4