1ODI

Purine nucleoside phosphorylase from Thermus Thermophilus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 1ODI

Classification: TRANSFERASE

Total Structure Weight: 155036.55

Macromolecule Entities
Molecule Chains Length Organism Details
PURINE NUCLEOSIDE PHOSPHORYLASE A, B, C..., D, E, FA, B, C, D, E, F 235 Thermus thermophilus EC#: 2.4.2.28 IUBMB
Gene Name(s): TTHA1435
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADN
Query on ADN

A, B, C, D, E, F ADENOSINE
C10 H13 N5 O4
OIRDTQYFTABQOQ-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D, E, F SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
ADN N/A in BindingDB
Kd: 62000 nM  BindingMOAD
Kd: 62000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.176
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 132.37 α = 90.00
b = 132.37 β = 90.00
c = 171.01 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-19
  • Released Date: 2003-02-27
  • Deposition author(s): Tahirov, T.H., Inagaki, E., Miyano, M.

Revision History

  • 2011-05-08
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance