1ODG

Very-short-patch DNA repair endonuclease bound to its reaction product site


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.356
  • R-Value Work: 0.287

Literature

Macromolecules
Sequence Display for 1ODG

Classification: HYDROLASE

Total Structure Weight: 23019.26


Macromolecule Entities
Molecule Chains Length Organism Details
DNA MISMATCH ENDONUCLEASE A 134 Escherichia coli EC#: 3.1 IUBMB
Gene Name(s): vsr b1960 JW1943
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*TP*AP*GP*GP*CP*5CM*TP*GP*GP*AP*TP*CP)-3' F, W 12 Escherichia coli

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
5CM
Query on 5CM
F, W DNA LINKING C10 H16 N3 O7 P DC

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.356
  • R-Value Work: 0.287
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 102.81 α = 90.00
b = 102.81 β = 90.00
c = 64.29 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-19
  • Released Date: 2003-03-13
  • Deposition author(s): Bunting, K.A., Roe, S.M., Headley, A., Brown, T., Savva, R., Pearl, L.H.

Revision History

  • 2011-05-08
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance