1OD1

Endothiapepsin PD135,040 complex

Structural Biology Knowledgebase: 1OD1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.37 Å
  • R-Value Observed: 0.125

Literature

Macromolecules
Sequence Display for 1OD1

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 34791.22

Macromolecule Entities
Molecule Chains Length Organism Details
ENDOTHIAPEPSIN A 330 Cryphonectria parasitica EC#: 3.4.23.22 IUBMB
Gene Name(s): EAPA EPN-1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0QS
Query on 0QS

A N~2~-[(2R)-2-benzyl-3-(tert-butylsulfonyl)propanoyl]- N-{(1R)-1-(cyclohexylmethyl)-3,3-difluoro- 2,2-dihydroxy-4-[(2-morpholin-4-ylethyl)amino]- 4-oxobutyl}-3-(1H-imidazol-3-ium-4-yl)-L- alaninamide
040, (Synonym)
C36 H56 F2 N7 O8 S
RRJUDVVMLCYZDV-DTXPUJKBSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.37 Å
  • R-Value Observed: 0.125
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.20 α = 90.00
b = 73.25 β = 110.10
c = 45.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-12
  • Released Date: 2003-06-12
  • Deposition author(s): Coates, L., Erskine, P.T., Mall, S., Gill, R.S., Wood, S.P., Cooper, J.B.

Revision History

  • 2012-12-12
    Type: Other | Details: Add PRD info
  • 2011-07-13
    Type: Linkage | Details: Linkage
  • 2011-07-13
    Type: Sequence database correspondence | Details: Sequence database correspondence
  • 2011-07-13
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry
  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4
  • 2011-07-13
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-13
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-13
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-13
    Type: Function and keywords | Details: Function and keywords