1OCS

CRYSTAL STRUCTURE OF THE YEAST PX-DOAMIN PROTEIN GRD19P (SORTING NEXIN3) COMPLEXED TO PHOSPHATIDYLINOSYTOL-3-PHOSPHATE.

Structural Biology Knowledgebase: 1OCS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.217

Literature

Macromolecules
Sequence Display for 1OCS

Classification: SORTING PROTEIN

Total Structure Weight: 18969.04

Macromolecule Entities
Molecule Chains Length Organism Details
SORTING NEXIN GRD19 A 162 Saccharomyces cerevisiae Fragment: PX-DOMAIN, RESIDUES 1-162
Details: CYSTEINE A91 CHEMICALLY MODIFIED BY BETA MERCAPTO-ETHANOL
Gene Name(s): SNX3 Gene View GRD19 YOR357C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CME
Query on CME
A L-PEPTIDE LINKING C5 H11 N O3 S2 CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.217
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 55.73 α = 90.00
b = 55.73 β = 90.00
c = 187.51 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-10
  • Released Date: 2003-12-12
  • Deposition author(s): Zhou, C.Z., Li De La Sierra-Gallay, I., Cheruel, S., Collinet, B., Minard, P., Blondeau, K., Henkes, G., Aufrere, R., Leulliot, N., Graille, M., Sorel, I., Savarin, P., De La Torre, F., Poupon, A., Janin, J., Van Tilbeurgh, H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4