1OCQ

COMPLEX OF THE ENDOGLUCANASE CEL5A FROM BACILLUS AGARADHEARANS AT 1.08 ANGSTROM RESOLUTION with cellobio-derived isofagomine

Structural Biology Knowledgebase: 1OCQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.08 Å
  • R-Value Free: 0.127
  • R-Value Work: 0.115

Literature

Macromolecules
Sequence Display for 1OCQ

Classification: HYDROLASE

Total Structure Weight: 34605.88

Macromolecule Entities
Molecule Chains Length Organism Details
ENDOGLUCANASE 5A A 303 [bacillus] agaradhaerens EC#: 3.2.1.4 IUBMB
Fragment: CATALYTIC CORE DOMAIN ONLY, RESIDUES 27-329
Gene Name(s): cel5A
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BGC
Query on BGC

A BETA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-VFUOTHLCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IFM
Query on IFM

A 5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE
4R,, (3R (Synonym)
C6 H13 N O3
QPYJXFZUIJOGNX-HSUXUTPPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.08 Å
  • R-Value Free: 0.127
  • R-Value Work: 0.115
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 55.02 α = 90.00
b = 69.68 β = 90.00
c = 76.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-09
  • Released Date: 2003-06-26
  • Deposition author(s): Varrot, A., Macdonald, J., Stick, R.V., Withers, S.G., Davies, G.J.

Revision History

  • 2015-07-22
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2015-07-22
    Type: Geometry validation | Details: REMARK 500
  • 2015-07-22
    Type: Version format compliance | Details: REMARK 4
  • 2015-07-22
    Type: Non-polymer description | Details: HETSYN,FORMUL
  • 2015-07-22
    Type: Other | Details: REMARK 525
  • 2015-07-22
    Type: Binding sites and description | Details: REMARK 800,SITE
  • 2015-07-22
    Type: Source and taxonomy | Details: SOURCE