1OC7

D405N MUTANT OF THE CELLOBIOHYDROLASE CEL6A FROM HUMICOLA INSOLENS IN COMPLEX WITH METHYL-TETRATHIO-ALPHA-D-CELLOPENTOSIDE AT 1.1 ANGSTROM RESOLUTION

Structural Biology Knowledgebase: 1OC7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.11 Å
  • R-Value Free: 0.124
  • R-Value Work: 0.105

Literature

Macromolecules
Sequence Display for 1OC7

Classification: HYDROLASE

Total Structure Weight: 41796.09

Macromolecule Entities
Molecule Chains Length Organism Details
CELLOBIOHYDROLASE II A 364 Humicola insolens EC#: 3.2.1.91 IUBMB
Fragment: CATALYTIC CORE DOMAIN RESIDUES 87-450
Details: N-LINKED N-ACETYLGLUCOSAMINE ON RESIDUE ASN 141
Gene Name(s): cel6A avi2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 8 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MA3
Query on MA3

A O1-METHYL-4-DEOXY-4-THIO-ALPHA-D-GLUCOSE
C7 H14 O5 S
PFROTWRHYMLGHR-GKHCUFPYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SGC
Query on SGC

A 4-DEOXY-4-THIO-BETA-D-GLUCOPYRANOSE
C6 H12 O5 S
KGSURTOFVLAWDC-QZABAPFNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BGC
Query on BGC

A BETA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-VFUOTHLCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DMF
Query on DMF

A DIMETHYLFORMAMIDE
C3 H7 N O
ZMXDDKWLCZADIW-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.11 Å
  • R-Value Free: 0.124
  • R-Value Work: 0.105
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 57.50 α = 90.00
b = 60.15 β = 90.00
c = 97.21 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-06
  • Released Date: 2003-07-10
  • Deposition author(s): Varrot, A., Frandsen, T.P., Von Ossowski, I., Boyer, V., Driguez, H., Schulein, M., Davies, G.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4