1O9B

QUINATE/SHIKIMATE DEHYDROGENASE YDIB COMPLEXED WITH NADH


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.294
  • R-Value Work: 0.226

Literature

Macromolecules
Sequence Display for 1O9B

Classification: OXIDOREDUCTASE

Total Structure Weight: 65353.42

Macromolecule Entities
Molecule Chains Length Organism Details
HYPOTHETICAL SHIKIMATE 5-DEHYDROGENASE-LIKE PROTEIN YDIB A, B 288 Escherichia coli EC#: 1.1.1.282 IUBMB
Gene Name(s): ydiB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAI
Query on NAI

A, B 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
NADH (Synonym)
C21 H29 N7 O14 P2
BOPGDPNILDQYTO-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A, B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.294
  • R-Value Work: 0.226
  • Space Group: P 64

Unit Cell:

Length (Å) Angle (°)
a = 157.87 α = 90.00
b = 157.87 β = 90.00
c = 40.01 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-12-12
  • Released Date: 2003-02-01
  • Deposition author(s): Michel, G., Cygler, M.

Revision History

  • 2013-10-30
    Type: Function and keywords | Details: KEYWDS
  • 2013-10-30
    Type: Citation | Details: JRNL
  • 2013-10-30
    Type: Polymer description | Details: COMPND
  • 2013-10-30
    Type: Other | Details: REMARK 525,MASTER
  • 2013-10-30
    Type: Source and taxonomy | Details: SOURCE
  • 2013-10-30
    Type: Binding sites and description | Details: REMARK 800,SITE
  • 2013-10-30
    Type: Geometry validation | Details: REMARK 500
  • 2013-10-30
    Type: Non-polymer description | Details: HETSYN,FORMUL,HETNAM,HET
  • 2013-10-30
    Type: Atom nomenclature | Details: HETATM
  • 2013-10-30
    Type: Version format compliance | Details: REMARK 4
  • 2013-10-30
    Type: Biological assembly | Details: REMARK 300,REMARK 350