1O91

Crystal Structure of a Collagen VIII NC1 Domain Trimer


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.185

Literature

Macromolecules
Sequence Display for 1O91

Classification: STRUCTURAL PROTEIN

Total Structure Weight: 59914.65

Macromolecule Entities
Molecule Chains Length Organism Details
COLLAGEN ALPHA 1(VIII) CHAIN A, B, C 178 Mus musculus Fragment: NONHELICAL REGION (NC1), RESIDUES 613-743
Gene Name(s): Col8a1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CPS
Query on CPS

C 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1- PROPANESULFONATE
CHAPS (Synonym)
C32 H58 N2 O7 S
UMCMPZBLKLEWAF-BCTGSCMUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.185
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 63.59 α = 90.00
b = 82.55 β = 90.00
c = 89.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-12-10
  • Released Date: 2003-11-20
  • Deposition author(s): Kvansakul, M., Bogin, O., Hohenester, E., Yayon, A.

Revision History

  • 2014-02-05
    Type: Refinement description | Details: REMARK 3
  • 2014-02-05
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2014-02-05
    Type: Polymer description | Details: REMARK 400
  • 2014-02-05
    Type: Version format compliance | Details: REMARK 4
  • 2014-02-05
    Type: Source and taxonomy | Details: SOURCE
  • 2014-02-05
    Type: Function and keywords | Details: KEYWDS
  • 2014-02-05
    Type: Non-polymer description | Details: FORMUL
  • 2014-02-05
    Type: Other | Details: REMARK 525,HEADER
  • 2014-02-05
    Type: Citation | Details: REMARK 1