1O66

Crystal structure of 3-methyl-2-oxobutanoate hydroxymethyltransferase

Structural Biology Knowledgebase: 1O66 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.231

Literature

Macromolecules
Sequence Display for 1O66

Classification: transferase

Total Structure Weight: 149856.56

Macromolecule Entities
Molecule Chains Length Organism Details
3-methyl-2-oxobutanoate hydroxymethyltransferase A, B, C, D, E 275 Neisseria meningitidis EC#: 2.1.2.11 IUBMB
Mutation: M10M, M19M, M31M, M38M, M47M, M63M, M78M, M103M, M109M, M118M, M127M, M178M, M213M, M216M, M232M
Gene Name(s): panB NMB0870
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B, C, D, E GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.231
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 165.19 α = 90.00
b = 111.49 β = 122.65
c = 99.08 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-10-23
  • Released Date: 2003-11-11
  • Deposition author(s): Structural GenomiX

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update