1O5R

Crystal structure of adenosine deaminase complexed with a potent inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.228

Literature

Macromolecules
Sequence Display for 1O5R

Classification: HYDROLASE

Total Structure Weight: 40853.95

Macromolecule Entities
Molecule Chains Length Organism Details
Adenosine deaminase A 356 Bos taurus EC#: 3.5.4.4 IUBMB
Mutation: N8D, R32K, K33R, S57T, E60D, E77D, V79I, K199Q, A246T, V261I, P279A, V281I, N313K, E314D, G352R
Gene Name(s): ADA Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FR9
Query on FR9

A 1-[(1R)-3-(6-{[(BENZYLAMINO)CARBONYL]AMINO}- 1H-INDOL-1-YL)-1-(HYDROXYMETHYL)PROPYL]-1H- IMIDAZOLE-4-CARBOXAMIDE
FR236913 (Synonym)
C24 H26 N6 O3
KCCUBLLGAMGDJL-HXUWFJFHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
FR9 Ki: 7.5 nM (91) BindingDB

Ki: 7.5 nM  BindingMOAD
Ki: 7.5 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.228
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 78.44 α = 90.00
b = 78.44 β = 90.00
c = 137.71 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-10-05
  • Released Date: 2004-09-21
  • Deposition author(s): Kinoshita, T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4