1O4T

Crystal structure of a predicted oxalate decarboxylase (tm1287) from thermotoga maritima at 1.95 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.160

Literature

Macromolecules
Sequence Display for 1O4T

Classification: LYASE

Total Structure Weight: 29787.56

Macromolecule Entities
Molecule Chains Length Organism Details
putative oxalate decarboxylase A, B 133 Thermotoga maritima Gene Name(s): TM_1287
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OXL
Query on OXL

A, B OXALATE ION
C2 O4
MUBZPKHOEPUJKR-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 89.13 α = 90.00
b = 49.74 β = 123.73
c = 69.55 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-07-03
  • Released Date: 2003-07-15
  • Deposition author(s): Joint Center for Structural Genomics (JCSG)

Revision History

  • Version 1_0: 2003-07-15

    Type: Initial release

  • Version 1_1: 2008-04-26

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Advisory, Version format compliance

  • Version 1_3: 2017-10-04

    Type: Refinement description