1O4G

CRYSTAL STRUCTURE OF SH2 IN COMPLEX WITH DPI59.

Structural Biology Knowledgebase: 1O4G SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Observed: 0.199

Literature

Macromolecules
Sequence Display for 1O4G

Classification: SIGNALING PROTEIN

Total Structure Weight: 12629.25

Macromolecule Entities
Molecule Chains Length Organism Details
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC A 108 Homo sapiens EC#: 2.7.10.2 IUBMB
Fragment: SH2 DOMAIN
Mutation: C44X
Gene Name(s): SRC Gene View SRC1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
I59
Query on I59

A HYDROXY(1-NAPHTHYL)METHYLPHOSPHONIC ACID
DPI59 (Synonym)
C11 H11 O4 P
AXIBZLYWMBUYRV-NSHDSACASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
I59 IC50: >5000000 nM (100) BindingDB

IC50: 5000000 nM  BindingMOAD
IC50: >5000000 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSO
Query on CSO
A L-PEPTIDE LINKING C3 H7 N O3 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Observed: 0.199
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 26.40 α = 90.00
b = 58.97 β = 90.00
c = 63.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-15
  • Released Date: 2004-02-17
  • Deposition author(s): Lange, G., Loenze, P., Liesum, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4