1O44

Crystal structure of sh2 in complex with ru85052

Structural Biology Knowledgebase: 1O44 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Observed: 0.190

Literature

Macromolecules
Sequence Display for 1O44

Classification: SIGNALING PROTEIN

Total Structure Weight: 13004.73

Macromolecule Entities
Molecule Chains Length Organism Details
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC A 108 Homo sapiens EC#: 2.7.10.2 IUBMB
Fragment: SH2 DOMAIN
Gene Name(s): SRC Gene View SRC1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
852
Query on 852

A 2-{4-[2-ACETYLAMINO-2-(1-BIPHENYL-4-YLMETHYL- 2-OXO-AZEPAN-3-YLCARBAMOYL)-ETHYL]-2-CARBOXY- PHENYL}-MALONIC ACID
RU85052 (Synonym)
C34 H35 N3 O9
CGOGPQNYHFBUEF-NSOVKSMOSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
852 IC50: 3 - 5 nM (100) BindingDB

IC50: 3 nM  BindingMOAD
IC50: 3 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Observed: 0.190
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 26.50 α = 90.00
b = 58.40 β = 90.00
c = 64.12 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-15
  • Released Date: 2004-02-17
  • Deposition author(s): Lange, G., Loenze, P., Liesum, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4