1O43

CRYSTAL STRUCTURE OF SH2 IN COMPLEX WITH RU82129.

Structural Biology Knowledgebase: 1O43 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Observed: 0.196

Literature

Macromolecules
Sequence Display for 1O43

Classification: SIGNALING PROTEIN

Total Structure Weight: 12942.71

Macromolecule Entities
Molecule Chains Length Organism Details
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC A 108 Homo sapiens EC#: 2.7.10.2 IUBMB
Fragment: SH2 DOMAIN
Gene Name(s): SRC Gene View SRC1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
821
Query on 821

A [4-((1Z)-2-(ACETYLAMINO)-3-{[1-(1,1'-BIPHENYL- 4-YLMETHYL)-2-OXOAZEPAN-3-YL]AMINO}-3-OXOPROP- 1-ENYL)-2-FORMYLPHENYL]ACETIC ACID
RU82129 (Synonym)
C33 H33 N3 O6
NKMPOVPTYDXGEC-MNRBYUMSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
821 IC50: 2200 nM (100) BindingDB

N/A in BindingMoad
IC50: 2200 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Observed: 0.196
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 26.44 α = 90.00
b = 58.66 β = 90.00
c = 64.11 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-15
  • Released Date: 2004-02-17
  • Deposition author(s): Lange, G., Loenze, P., Liesum, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4