1O12

Crystal structure of N-acetylglucosamine-6-phosphate deacetylase (TM0814) from Thermotoga maritima at 2.5 A resolution

Structural Biology Knowledgebase: 1O12 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 1O12

Classification: HYDROLASE

Total Structure Weight: 84492.70

Macromolecule Entities
Molecule Chains Length Organism Details
N-acetylglucosamine-6-phosphate deacetylase A, B 376 Thermotoga maritima EC#: 3.5.1.25 IUBMB
Mutation: M1M, M42M, M59M, M66M, M90M, M149M, M185M, M237M, M352M
Gene Name(s): TM_0814 Tmari_0815
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FE
Query on FE

A, B FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 85.07 α = 90.00
b = 85.07 β = 90.00
c = 206.01 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-10-15
  • Released Date: 2002-12-18
  • Deposition author(s): Joint Center for Structural Genomics (JCSG)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4