1O0F

RNASE A in complex with 3',5'-ADP

Structural Biology Knowledgebase: 1O0F SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.229

Literature

Macromolecules
Sequence Display for 1O0F

Classification: hydrolase

Total Structure Weight: 28271.20

Macromolecule Entities
Molecule Chains Length Organism Details
Ribonuclease pancreatic A, B 124 Bos taurus EC#: 3.1.27.5 IUBMB
Gene Name(s): RNASE1 Gene View RNS1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
A3P
Query on A3P

A, B ADENOSINE-3'-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
WHTCPDAXWFLDIH-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
A3P N/A in BindingDB
Ki: 5000 nM  BindingMOAD
Ki: 5000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.229
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 99.86 α = 90.00
b = 32.69 β = 90.66
c = 71.93 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-21
  • Released Date: 2003-12-09
  • Deposition author(s): Leonidas, D.D., Oikonomakos, N.G., Chrysina, E.D., Kosmopoulou, M.N., Vlassi, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4