1O08

Structure of Pentavalent Phosphorous Intermediate of an Enzyme Catalyzed Phosphoryl transfer Reaction observed on cocrystallization with Glucose 1-phosphate

Structural Biology Knowledgebase: 1O08 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.179
  • R-Value Work: 0.141

Literature

Macromolecules
Sequence Display for 1O08

Classification: Isomerase

Total Structure Weight: 24603.19

Macromolecule Entities
Molecule Chains Length Organism Details
beta-phosphoglucomutase A 221 Lactococcus lactis EC#: 5.4.2.6 IUBMB
Gene Name(s): pgmB LL0429 L0001
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
G16
Query on G16

A ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE
C6 H13 O12 P2
RWHOZGRAXYWRNX-VFUOTHLCSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.179
  • R-Value Work: 0.141
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 36.94 α = 90.00
b = 54.30 β = 90.00
c = 104.68 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-20
  • Released Date: 2003-03-18
  • Deposition author(s): Lahiri, S.D., Zhang, G., Dunaway-Mariano, D., Allen, K.N.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4