1NY2

Human alpha thrombin inhibited by RPPGF and hirugen


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Work: 0.202

Literature

Macromolecules
Sequence Display for 1NY2

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 35814.07

Macromolecule Entities
Molecule Chains Length Organism Details
thrombin light chain 1 36 Homo sapiens EC#: 3.4.21.5 IUBMB
Fragment: light chain A
Gene Name(s): F2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
thrombin Heavy chain 2 259 Homo sapiens EC#: 3.4.21.5 IUBMB
Fragment: heavy chain B
Gene Name(s): F2 Gene View
Hirugen 3 10 synthetic
Inhibitor peptide RPPGF 4 5 Homo sapiens Gene Name(s): KNG1 Gene View BDK KNG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
TYS
Query on TYS
3 L-PEPTIDE LINKING C9 H11 N O6 S TYR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Observed:
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 79.15 α = 90.00
b = 104.97 β = 90.00
c = 45.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-11
  • Released Date: 2003-03-04
  • Deposition author(s): Krishnan, R., Tulinsky, A., Schmaier, A.H., Hasan, A.A., Warnock, M., Srikanth, S., Mahdi, F.

Revision History

  • 2015-03-25
    Type: Sequence database correspondence | Details: Correct numbering in struct_ref_seq
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Sequence database correspondence | Details: Sequence database correspondence
  • 2011-07-13
    Type: Function and keywords | Details: Function and keywords
  • 2011-07-13
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-13
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-13
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-13
    Type: Linkage | Details: Linkage
  • 2011-07-13
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry