1NWX

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773

Structural Biology Knowledgebase: 1NWX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.313
  • R-Value Work: 0.285

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1NWX

Classification: RIBOSOME

Total Structure Weight: 1380433.00


Macromolecule Entities
Molecule Chains Length Organism Details
ribosomal protein L2 A 274 Deinococcus radiodurans Gene Name(s): rplB DR_0314
ribosomal protein L3 B 211 Deinococcus radiodurans Gene Name(s): rplC DR_0311
ribosomal protein L4 C 204 Deinococcus radiodurans Gene Name(s): rplD DR_0312
ribosomal protein L5 D 180 Deinococcus radiodurans Gene Name(s): rplE DR_0323
ribosomal protein L6 E 185 Deinococcus radiodurans Gene Name(s): rplF DR_2111
ribosomal protein L9 F 146 Deinococcus radiodurans Gene Name(s): rplI DR_0102
ribosomal protein L11 G 144 Deinococcus radiodurans Gene Name(s): rplK DR_2046
ribosomal protein L13 H 174 Deinococcus radiodurans Gene Name(s): rplM DR_0174
ribosomal protein L14 I 134 Deinococcus radiodurans Gene Name(s): rplN DR_0321
ribosomal protein L15 J 156 Deinococcus radiodurans Gene Name(s): rplO DR_2115
ribosomal protein L16 K 141 Deinococcus radiodurans Gene Name(s): rplP DR_0318
ribosomal protein L17 L 116 Deinococcus radiodurans Gene Name(s): rplQ DR_2129
ribosomal protein L18 M 113 Deinococcus radiodurans Gene Name(s): rplR DR_2112
ribosomal protein L19 N 166 Deinococcus radiodurans Gene Name(s): rplS DR_0755
ribosomal protein L20 O 118 Deinococcus radiodurans Gene Name(s): rplT DR_2004
ribosomal protein L21 P 100 Deinococcus radiodurans Gene Name(s): rplU DR_0086
ribosomal protein L22 Q 134 Deinococcus radiodurans Gene Name(s): rplV DR_0316
ribosomal protein L23 R 94 Deinococcus radiodurans Gene Name(s): rplW DR_0313
ribosomal protein L24 S 115 Deinococcus radiodurans Gene Name(s): rplX DR_0322
general stress protein Ctc T 237 Deinococcus radiodurans Gene Name(s): rplY ctc DR_0427
ribosomal protein L27 U 91 Deinococcus radiodurans Gene Name(s): rpmA DR_0085
ribosomal protein L29 W 67 Deinococcus radiodurans Gene Name(s): rpmC DR_0319
ribosomal protein L30 X 55 Deinococcus radiodurans Gene Name(s): rpmD DR_2114
ribosomal protein L31 Y 73 Deinococcus radiodurans Gene Name(s): rpmE DR_0825
ribosomal protein L32 Z 59 Deinococcus radiodurans Gene Name(s): rpmF DR_2366
ribosomal protein L33 1 55 Deinococcus radiodurans Gene Name(s): rpmG DR_2049
ribosomal protein L34 2 47 Deinococcus radiodurans Gene Name(s): rpmH DR_2152
ribosomal protein L35 3 65 Deinococcus radiodurans Gene Name(s): rpmI DR_2005
ribosomal protein L36 4 37 Deinococcus radiodurans Gene Name(s): rpmJ DR_2124
Macromolecule Entities
Molecule Chains Length Organism Details
23S RIBOSOMAL RNA 0 2880 Deinococcus radiodurans
5S RIBOSOMAL RNA 9 124 Deinococcus radiodurans

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
773
Query on 773

0 CETHROMYCIN
ABT-773 (Synonym)
C42 H59 N3 O10
PENDGIOBPJLVBT-ONLVEXIXSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.313
  • R-Value Work: 0.285
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 171.00 α = 90.00
b = 409.50 β = 90.00
c = 695.70 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2003-02-07
  • Released Date: 2003-03-18
  • Deposition author(s): Schluenzen, F., Harms, J., Franceschi, F., Hansen, H.A.S., Bartels, H., Zarivach, R., Yonath, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4