1NVJ

Deletion Mutant (Delta 141) of Molybdopterin Synthase

Structural Biology Knowledgebase: 1NVJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.177

Literature

Macromolecules
Sequence Display for 1NVJ

Classification: Transferase

Total Structure Weight: 95910.23

Macromolecule Entities
Molecule Chains Length Organism Details
Molybdopterin converting factor subunit 2 A, B, C..., D, E, FA, B, C, D, E, F 140 Escherichia coli EC#: 2.8.1.12 IUBMB
Fragment: residues 0-139
Gene Name(s): moaE chlA5 b0785 JW0768
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B, C, D GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FMT
Query on FMT

A, B, C, D, E, F FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

B, D, F SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.177
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 104.13 α = 90.00
b = 127.83 β = 90.00
c = 138.12 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-03
  • Released Date: 2003-05-06
  • Deposition author(s): Rudolph, M.J., Wuebbens, M.M., Turque, O., Rajagopalan, K.V., Schindelin, H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update