1NVE

Crystal structure of 3-dehydroquinate synthase (DHQS) in complex with ZN2+ and NAD

Structural Biology Knowledgebase: 1NVE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.58 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.208

Literature

Macromolecules
Sequence Display for 1NVE

Classification: lyase

Total Structure Weight: 174853.94

Macromolecule Entities
Molecule Chains Length Organism Details
3-DEHYDROQUINATE SYNTHASE A, B, C, D 393 Aspergillus nidulans EC#: 4.2.3.4 IUBMB
Gene Name(s): aromA aroA aroM AN0708
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A, B, C, D NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, C CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.58 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.208
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 83.64 α = 90.00
b = 70.35 β = 90.78
c = 144.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-03
  • Released Date: 2003-03-18
  • Deposition author(s): Nichols, C.E., Ren, J., Lamb, H.K., Hawkins, A.R., Stammers, D.K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4