1NUB

HELIX C DELETION MUTANT OF BM-40 FS-EC DOMAIN PAIR


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.306
  • R-Value Work: 0.255

Literature

Macromolecules
Sequence Display for 1NUB

Classification: EXTRACELLULAR MODULE

Total Structure Weight: 54163.83

Macromolecule Entities
Molecule Chains Length Organism Details
BASEMENT MEMBRANE PROTEIN BM-40 A, B 229 Homo sapiens Fragment: FS-EC DOMAIN PAIR, FS, FOLLISTATIN-LIKE, EC, EXTRACELLULAR CALCIUM-BINDING
Mutation: ΔV213, ΔE214, ΔL215, ΔL216, ΔA217, ΔR218, ΔD219, ΔF220
Details: HELIX C (RESIDUES 196-203) DELETION MUTANT
Gene Name(s): SPARC Gene View ON
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.306
  • R-Value Work: 0.255
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 51.86 α = 90.00
b = 88.14 β = 90.00
c = 153.73 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-12-05
  • Released Date: 1998-12-30
  • Deposition author(s): Hohenester, E., Sasaki, T., Timpl, R.

Revision History

  • Version 1_0: 1998-12-30

    Type: Initial release

  • Version 1_1: 2008-03-24

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Non-polymer description, Version format compliance