1NU7

Staphylocoagulase-Thrombin Complex

Structural Biology Knowledgebase: 1NU7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.209

Literature

Macromolecules
Sequence Display for 1NU7

Classification: hydrolase / hydrolase inhibitor

Total Structure Weight: 135046.72

Macromolecule Entities
Molecule Chains Length Organism Details
Thrombin light chain A, E 28 Homo sapiens EC#: 3.4.21.5 IUBMB
Fragment: UNP residues 332-359
Gene Name(s): F2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Thrombin heavy chain B, F 259 Homo sapiens EC#: 3.4.21.5 IUBMB
Fragment: UNP residues 364-622
Gene Name(s): F2 Gene View
Staphylocoagulase D, H 282 Staphylococcus aureus Fragment: UNP residues 1-281
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0ZJ
Query on 0ZJ

B, F N-(sulfanylacetyl)-D-phenylalanyl-N-[(2S,3S)- 6-{[amino(iminio)methyl]amino}-1-chloro-2- hydroxyhexan-3-yl]-L-prolinamide
ATA-PPACK, (Synonym)
C23 H36 Cl N6 O4 S
AZCCJYZROBVYNQ-ZSYWTGECSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HG
Query on HG

D, H MERCURY (II) ION
Hg
BQPIGGFYSBELGY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IMD
Query on IMD

D, H IMIDAZOLE
C3 H5 N2
RAXXELZNTBOGNW-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.209
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 180.17 α = 90.00
b = 102.00 β = 130.08
c = 135.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-31
  • Released Date: 2003-10-07
  • Deposition author(s): Friedrich, R., Bode, W., Fuentes-Prior, P., Panizzi, P., Bock, P.E.

Revision History

  • 2012-12-12
    Type: Other | Details: Add PRD info
  • 2011-07-13
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-13
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-13
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-13
    Type: Function and keywords | Details: Function and keywords
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Linkage | Details: Linkage
  • 2011-07-13
    Type: Sequence database correspondence | Details: Sequence database correspondence
  • 2011-07-13
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values