1NU3

Limonene-1,2-epoxide hydrolase in complex with valpromide

Structural Biology Knowledgebase: 1NU3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.158

Literature

Macromolecules
Sequence Display for 1NU3

Classification: hydrolase

Total Structure Weight: 33866.26

Macromolecule Entities
Molecule Chains Length Organism Details
limonene-1,2-epoxide hydrolase A, B 149 Rhodococcus erythropolis EC#: 3.3.2.8 IUBMB
Mutation: T2A, M32M, M52M, M56M, M78M
Gene Name(s): limA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MES
Query on MES

A 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
VPR
Query on VPR

A, B 2-PROPYLPENTANAMIDE
VALPROMIDE (Synonym)
C8 H17 N O
OMOMUFTZPTXCHP-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
VPR N/A in BindingDB
N/A in BindingMoad
Ki: 100000 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.158
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 45.60 α = 90.00
b = 47.66 β = 90.00
c = 129.24 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-30
  • Released Date: 2003-06-10
  • Deposition author(s): Arand, M., Hallberg, B.M., Zou, J., Bergfors, T., Oesch, F., van der Werf, M.J., de Bont, J.A.M., Jones, T.A., Mowbray, S.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4